Lodging your SMSF return on time is more important than ever

Jude Schofield • November 17, 2025

Running your own self-managed super fund (SMSF) comes with many responsibilities and lodging an annual return is one of the most important.

While paperwork may not be anyone’s favourite task, the Australian Taxation Office (ATO) takes the SMSF Annual Return very seriously. As of February 2025, around 85,000 SMSFs had not lodged their annual return for the 2023 income year and some 54,000 were still outstanding for 2022.i


The ATO has made SMSF lodgement a key focus of its 2025-26 Corporate Plan and is now taking targeted compliance action against trustees who fail to meet their obligations. Penalties may include fines, loss of concessional tax status and even disqualification from managing an SMSF.


Why lodging matters


The ATO considers timely SMSF annual return lodgement a fundamental obligation for SMSF trustees.


The SMSF annual return is more than just a tax return. It includes regulatory information, member contribution data and enables payment of the SMSF supervisory levy. It must be lodged every financial year, even if the fund has no activity or tax liability.


Non-lodgement is a red flag for the ATO, especially in newly established SMSFs. It may indicate illegal early access to super savings and can hinder the ATO’s ability to monitor compliance with contribution caps, Division 293 tax and transfer balance caps.


Potential penalties


The SMSF sector continues to grow with more than 625,000 funds holding assets worth just over $1 trillion, making up a quarter of the total assets held in superannuation funds.ii


In recent years, the regulator has invested in data-matching technology and analytics to identify non-compliant funds more quickly. This means trustees who fall behind on lodgements are more likely than ever to be detected and penalised.


Failing to lodge your fund’s SMSF annual return can result in:


  • Fines – administrative penalties can be imposed on each trustee, not just the fund
  • Loss of concessional tax status – non-compliant funds may lose their concessional tax treatment, resulting in a higher tax rate on income
  • Tax penalties and interest – extra charges may apply for late payments or under-reported income
  • Disqualification as an SMSF trustee – this is recorded on a public register and can have long term consequences


If your SMSF annual return is more than two weeks overdue, its Super Fund Lookup status may be changed to ‘regulation details removed’, restricting its ability to receive super rollovers and employer contributions.


Understanding your SMSF annual return responsibilities


Trustees must follow a specific process each year to meet their SMSF annual return obligations:


  1. Prepare financial accounts - including valuing the fund’s assets, which may require consulting a professional valuer if the assets not regularly priced on an open market.
  2. Appoint an approved SMSF auditor – at least 45 days before your lodgement due date.
  3. Complete the audit – the auditor reviews the fund’s financial statements and assesses its compliance with the super laws then provides a report to trustees that may include issues to be addressed.
  4. Lodge the SMSF annual return – include auditor details, audit summary and payment for any outstanding tax and the funds SMSF supervisory levy.


The ATO does not issue a Notice of Assessment for SMSFs but will issue a Notice of Amended Assessment if subsequent amendments are made to the tax return.

With the ATO increasingly focussing on this area, it’s time to check the lodgement status of your SMSF.


How we can help

Managing an SMSF can be complex, so a qualified accountant can be an ally when it comes to successfully and efficiently running your SMSF.


Given the significant responsibilities involved in managing an SMSF, the ATO recommends trustees consider using professional help. We can advise and support you when it comes to the financial aspects of running your SMSF and ensure everything is lodged on time.


i SMSF Association National Conference address | Australian Taxation Office

ii SMSF Association National Conference address | Australian Taxation Office

By Nikki Ashurst • November 2, 2026
Many Australians don't know how their super fund has performed or what it invests in. Are you one of them? Here's what to check and why it matters. Do you know how your super fund performed over the last two years? Many Australians don’t and are working towards their financial future without fully understanding one of their most important assets and without a clear plan for how their super may support them in retirement. That's not surprising, as many people view super as something that should run quietly in the background while they're busy with careers, families and everything else that life throws at them. But when you’re not sure what’s happening behind your balance, it’s harder to know whether you’re on track, whether your current approach reflects your goals or what opportunities might be available to help you make the most of what you’ve built so far. Your super isn't sitting in an account, it's invested Super is invested by a fund on your behalf across a mix of assets, with those investments working to grow your balance over time. Those include: Shares Ownership in Australian and international publicly listed companies. Their value can rise and fall, sometimes substantially over short periods but shares can provide capital growth over the long term. Property and infrastructure Real assets like office buildings, shopping centres, airports and energy networks. They can produce income and don't always behave in the same way as share markets, helping diversify investment holdings. Fixed interest and bonds Lending to governments and companies in return for interest. They can provide regular income and be steadier than shares, although returns and risk vary depending on the investment. Cash Generally, the most stable and lowest risk investment type. It can provide stability and faster access to money but typically offers lower longer term return potential. The investment option you choose determines the mix of assets held in your super based on your risk appetite. Most super funds offer options from conservative to high growth. If you’re young, a growth option with a higher exposure to growth assets like shares could offer higher returns over time – but it also comes with higher risk. As retirement nears, you might want to consider a more conservative approach with more defensive assets, like bonds for example to protect your savings. If you've never made a choice, you're probably in your fund's default option, which is designed to suit a broad membership. It’s worth knowing whether the mix you're in matches your circumstances and goals, including how far you are from retirement. Why performance alone is not a true comparison If you're thinking about how your super compares, returns are often where people start. The trouble is that a return figure means nothing without context: What it's being compared to Growth and conservative options invest differently and with different levels of risk. Compare like with like or the comparison may not be genuine. The comparison period A single year can be heavily influenced by short term market conditions. Super is measured in decades, so five, seven and ten year returns tell you far more about whether a fund is consistently doing its job, albeit not a predictor of future performance. Fees and tax Published returns should reflect investment fees, costs and tax but administration fees may be charged separately from your balance. Two funds quoting the same return can leave you in meaningfully different places once all fees are accounted for. Then there are the things that returns can't show you at all. For example, what insurance is attached to your account and what it's costing you, whether the fund offers guidance, tools and advice or simply sends a statement once a year. Another consideration maybe the level of support available when you need it. When comparing funds, it's worth looking at the full picture, including performance, fees, investment options, retirement support and member benefits. What today’s decisions mean tomorrow To understand how your super stacks up, start here: Find your investment option It's on your annual statement and in your online account. Look at what's in it Your fund publishes the asset allocation (shares, cash etc.) for each investment option. Check the long-term return for that option Focus on five and ten year returns, not just last year and compare them with equivalent options. Understand the total cost Add together administration fees, investment fees and insurance premiums as an annual dollar figure. Comparing super is about working out which option will perform best for you. Before you jump in, it’s worth understanding what's behind the numbers so you can make decisions based on more than a headline return. Knowing where you stand is the first step A super balance tells you where you are today. Understanding how your super is invested, how it compares and whether it's aligned with your goals helps show whether you're heading in the right direction. Source: MLC The information in this article does not take into account your objectives, needs and circumstances. We recommend that you obtain investment and taxation advice specific to your investment objectives, financial situation and particular needs before making any investment decision or acting on any of the information contained in this document. Subject to law, Capstone Financial Planning nor their directors, employees or authorised representatives gives any representation or warranty as to the reliability, accuracy or completeness of the information; or accepts any responsibility for any person acting, or refraining from acting, on the basis of the information contained in this document. Principal Wealth Management Pty Ltd trading as BMO Financial Solutions ABN 53 109 336 601 is a Corporate Authorised Representative (CAR 277821) of Capstone Financial Planning Pty Ltd ABN 24 093 733 969 Australian Financial Services Licence (AFSL) No. 223135.
By Jude Schofield • October 7, 2026
More Australians are choosing to take direct control of their retirement savings by establishing a self-managed super fund (SMSF) and according to the SMSF Association, Aussies now see their super as an important part of building and managing their overall wealth.